Reply to ``Comment on `Insulating Behavior of λ\lambda-DNA on the Micron Scale' "

In our experiment, we found that the resistance of vacuum-dried $\lambda$-DNA exceeds $10^{14} \Omega$ at 295 K. Bechhoefer and Sen have raised a number of objections to our conclusion. We provide counter arguments to support our original conclusion.Comment: 1 page reply to comment, 1 figur

Kramers-Kronig, Bode, and the meaning of zero

The implications of causality, as captured by the Kramers-Kronig relations between the real and imaginary parts of a linear response function, are familiar parts of the physics curriculum. In 1937, Bode derived a similar relation between the magnitude (response gain) and phase. Although the Kramers-Kronig relations are an equality, Bode's relation is effectively an inequality. This perhaps-surprising difference is explained using elementary examples and ultimately traces back to delays in the flow of information within the system formed by the physical object and measurement apparatus.Comment: 8 pages; American Journal of Physics, to appea

Secondary Instabilities of Surface Waves on Viscous Fluids in the Faraday Instability

Secondary instabilities of Faraday waves show three regimes: (1) As seen previously, low-viscosity (nu) fluids destabilize first into squares. At higher driving accelerations a, squares show low-frequency modulations corresponding to the motion of phase defects, while theory predicts a stationary transverse amplitude modulation (TAM). (2) High-nu fluids destabilize first to stripes. Stripes then show an oscillatory TAM whose frequency is incommensurate with the driving frequency. At higher a, the TAM undergoes a phase instability. At still higher a, edge dislocations form and fluid droplets are ejected. (3) Intermediate-nu fluids show a complex coexistence of squares and stripes, as well as stationary and oscillatory TAM instabilities of the stripes.Comment: REVTEX, with 3 separate uuencoded figures, to appear in Europhys. Let

Enhancement of Gear Fault Detection Using Narrowband Interference Cancellation

The development of enhanced fault detection ability for gearbox systems has received considerable attention in recent years. Detecting the gear fault easier is very important for maintenance action. This has driven the need in research for enhanced gear fault detection method. The goal is to extract periodic impulse signal from the very noise signal which mainly contains the narrowband signals. This can be done by enhancing the impulsive signals while suppressing the narrowband signals. This paper used a new method, Narrowband Interference Cancellation, to detect the gear fault. This method reserves the impulsive signal produced by gear fault and removes the other signals out. The methodology is demonstrated on a gearbox run-to-failure test. The results show that Narrowband Interference Cancellation can enable the gear fault detection easier

Arbitrarily slow, non-quasistatic, isothermal transformations

For an overdamped colloidal particle diffusing in a fluid in a controllable, virtual potential, we show that arbitrarily slow transformations, produced by smooth deformations of a double-well potential, need not be reversible. The arbitrarily slow transformations do need to be fast compared to the barrier crossing time, but that time can be extremely long. We consider two types of cyclic, isothermal transformations of a double-well potential. Both start and end in the same equilibrium state, and both use the same basic operations---but in different order. By measuring the work for finite cycle times and extrapolating to infinite times, we found that one transformation required no work, while the other required a finite amount of work, no matter how slowly it was carried out. The difference traces back to the observation that when time is reversed, the two protocols have different outcomes, when carried out arbitrarily slowly. A recently derived formula relating work production to the relative entropy of forward and backward path probabilities predicts the observed work average.Comment: 6 pages, 6 figure

Diffusion-limited loop formation of semiflexible polymers: Kramers theory and the intertwined time scales of chain relaxation and closing

We show that Kramers rate theory gives a straightforward, accurate estimate of the closing time $\tau_c$ of a semiflexible polymer that is valid in cases of physical interest. The calculation also reveals how the time scales of chain relaxation and closing are intertwined, illuminating an apparent conflict between two ways of calculating $\tau_c$ in the flexible limit.Comment: Europhys. Lett., 2003 (in press). 8 pages, 3 figures. See also, physics/0101087 for physicist's approach to and the importance of semiflexible polymer looping, in DNA replicatio

Formation of disclination lines near a free nematic interface

We have studied the nucleation and the physical properties of a -1/2 wedge disclination line near the free surface of a confined nematic liquid crystal. The position of the disclination line has been related to the material parameters (elastic constants, anchoring energy and favored anchoring angle of the molecules at the free surface). The use of a planar model for the structure of the director field (whose predictions have been contrasted to those of a fully three-dimensional model) has allowed us to relate the experimentally observed position of the disclination line to the relevant properties of the liquid crystals. In particular, we have been able to observe the collapse of the disclination line due to a temperature-induced anchoring angle transition, which has allowed us to rule out the presence of a real disclination line near the nematic/isotropic front in directional growth experiments. 61.30.Jf,61.30.G

Theory and computation of directional nematic phase ordering

A computational study of morphological instabilities of a two-dimensional nematic front under directional growth was performed using a Landau-de Gennes type quadrupolar tensor order parameter model for the first-order isotropic/nematic transition of 5CB (pentyl-cyanobiphenyl). A previously derived energy balance, taking anisotropy into account, was utilized to account for latent heat and an imposed morphological gradient in the time-dependent model. Simulations were performed using an initially homeotropic isotropic/nematic interface. Thermal instabilities in both the linear and non-linear regimes were observed and compared to past experimental and theoretical observations. A sharp-interface model for the study of linear morphological instabilities, taking into account additional complexity resulting from liquid crystalline order, was derived. Results from the sharp-interface model were compared to those from full two-dimensional simulation identifying the specific limitations of simplified sharp-interface models for this liquid crystal system. In the nonlinear regime, secondary instabilities were observed to result in the formation of defects, interfacial heterogeneities, and bulk texture dynamics.Comment: first revisio

Non-isothermal model for the direct isotropic/smectic-A liquid crystalline transition

An extension to a high-order model for the direct isotropic/smectic-A liquid crystalline phase transition was derived to take into account thermal effects including anisotropic thermal diffusion and latent heat of phase-ordering. Multi-scale multi-transport simulations of the non-isothermal model were compared to isothermal simulation, showing that the presented model extension corrects the standard Landau-de Gennes prediction from constant growth to diffusion-limited growth, under shallow quench/undercooling conditions. Non-isothermal simulations, where meta-stable nematic pre-ordering precedes smectic-A growth, were also conducted and novel non-monotonic phase-transformation kinetics observed.Comment: First revision: 20 pages, 7 figure